Package index • mrangr

Simulation preparation

grf(): Generate a Gaussian Random Field
K_sim(): Carrying Capacity Map Simulator
initialise_inv(): Initialise Invasion Parameters
initialise_com(): Initialise Community Simulation Data
update(<sim_com_data>): Update sim_com_data Object
summary(<sim_com_data>): Summary Of sim_com_data Object

Simulation

sim_com(): Simulate Community Dynamics Over Time
summary(<sim_com_results>): Summary Of sim_com_results Object

Post-processing

virtual_ecologist(): Virtual Ecologist
to_rast(<sim_com_results>): Convert sim_com_results to SpatRaster(s)
plot(<sim_com_results>): Plot sim_com_results Object
plot_series(): Community Time-Series Plot

Data

K_map_eg.tif: Example Of Carrying Capacity Map
n1_map_eg.tif: Example Of Abundance Map At First Time Step Of The Simulation
a_eg: Example Of Interaction Coefficients Matrix
get_community(): Load Example Community Object
community_eg: Example Community Data
get_simulated_com(): Load Example Simulated Community Results
simulated_com_eg: Example Simulated Community Output

Helper functions

diagonal(): Compute Maximum Possible Distance for a Raster Object
set_zero(): Set Non-Missing Values to Zero